Applied Survival Analysis Using R

Author: Dirk F. Moore

Publisher: Springer

ISBN: 3319312456

Category: Medical

Page: 226

View: 6436

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Applied Survival Analysis Using R covers the main principles of survival analysis, gives examples of how it is applied, and teaches how to put those principles to use to analyze data using R as a vehicle. Survival data, where the primary outcome is time to a specific event, arise in many areas of biomedical research, including clinical trials, epidemiological studies, and studies of animals. Many survival methods are extensions of techniques used in linear regression and categorical data, while other aspects of this field are unique to survival data. This text employs numerous actual examples to illustrate survival curve estimation, comparison of survivals of different groups, proper accounting for censoring and truncation, model variable selection, and residual analysis. Because explaining survival analysis requires more advanced mathematics than many other statistical topics, this book is organized with basic concepts and most frequently used procedures covered in earlier chapters, with more advanced topics near the end and in the appendices. A background in basic linear regression and categorical data analysis, as well as a basic knowledge of calculus and the R system, will help the reader to fully appreciate the information presented. Examples are simple and straightforward while still illustrating key points, shedding light on the application of survival analysis in a way that is useful for graduate students, researchers, and practitioners in biostatistics.

Applied Survival Analysis Using R

Author: Dirk F. Moore

Publisher: Springer

ISBN: 9783319312439

Category: Medical

Page: 226

View: 9188

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Applied Survival Analysis Using R covers the main principles of survival analysis, gives examples of how it is applied, and teaches how to put those principles to use to analyze data using R as a vehicle. Survival data, where the primary outcome is time to a specific event, arise in many areas of biomedical research, including clinical trials, epidemiological studies, and studies of animals. Many survival methods are extensions of techniques used in linear regression and categorical data, while other aspects of this field are unique to survival data. This text employs numerous actual examples to illustrate survival curve estimation, comparison of survivals of different groups, proper accounting for censoring and truncation, model variable selection, and residual analysis. Because explaining survival analysis requires more advanced mathematics than many other statistical topics, this book is organized with basic concepts and most frequently used procedures covered in earlier chapters, with more advanced topics near the end and in the appendices. A background in basic linear regression and categorical data analysis, as well as a basic knowledge of calculus and the R system, will help the reader to fully appreciate the information presented. Examples are simple and straightforward while still illustrating key points, shedding light on the application of survival analysis in a way that is useful for graduate students, researchers, and practitioners in biostatistics.

Applied Survival Analysis

Regression Modeling of Time to Event Data

Author: David W. Hosmer, Jr.,Stanley Lemeshow,Susanne May

Publisher: John Wiley & Sons

ISBN: 1118211588

Category: Mathematics

Page: 416

View: 1269

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THE MOST PRACTICAL, UP-TO-DATE GUIDE TO MODELLING AND ANALYZING TIME-TO-EVENT DATA—NOW IN A VALUABLE NEW EDITION Since publication of the first edition nearly a decade ago, analyses using time-to-event methods have increase considerably in all areas of scientific inquiry mainly as a result of model-building methods available in modern statistical software packages. However, there has been minimal coverage in the available literature to9 guide researchers, practitioners, and students who wish to apply these methods to health-related areas of study. Applied Survival Analysis, Second Edition provides a comprehensive and up-to-date introduction to regression modeling for time-to-event data in medical, epidemiological, biostatistical, and other health-related research. This book places a unique emphasis on the practical and contemporary applications of regression modeling rather than the mathematical theory. It offers a clear and accessible presentation of modern modeling techniques supplemented with real-world examples and case studies. Key topics covered include: variable selection, identification of the scale of continuous covariates, the role of interactions in the model, assessment of fit and model assumptions, regression diagnostics, recurrent event models, frailty models, additive models, competing risk models, and missing data. Features of the Second Edition include: Expanded coverage of interactions and the covariate-adjusted survival functions The use of the Worchester Heart Attack Study as the main modeling data set for illustrating discussed concepts and techniques New discussion of variable selection with multivariable fractional polynomials Further exploration of time-varying covariates, complex with examples Additional treatment of the exponential, Weibull, and log-logistic parametric regression models Increased emphasis on interpreting and using results as well as utilizing multiple imputation methods to analyze data with missing values New examples and exercises at the end of each chapter Analyses throughout the text are performed using Stata® Version 9, and an accompanying FTP site contains the data sets used in the book. Applied Survival Analysis, Second Edition is an ideal book for graduate-level courses in biostatistics, statistics, and epidemiologic methods. It also serves as a valuable reference for practitioners and researchers in any health-related field or for professionals in insurance and government.

Joint Models for Longitudinal and Time-to-Event Data

With Applications in R

Author: Dimitris Rizopoulos

Publisher: CRC Press

ISBN: 1439872864

Category: Mathematics

Page: 275

View: 8095

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In longitudinal studies it is often of interest to investigate how a marker that is repeatedly measured in time is associated with a time to an event of interest, e.g., prostate cancer studies where longitudinal PSA level measurements are collected in conjunction with the time-to-recurrence. Joint Models for Longitudinal and Time-to-Event Data: With Applications in R provides a full treatment of random effects joint models for longitudinal and time-to-event outcomes that can be utilized to analyze such data. The content is primarily explanatory, focusing on applications of joint modeling, but sufficient mathematical details are provided to facilitate understanding of the key features of these models. All illustrations put forward can be implemented in the R programming language via the freely available package JM written by the author. All the R code used in the book is available at: http://jmr.r-forge.r-project.org/

Multivariate Survival Analysis and Competing Risks

Author: Martin J. Crowder

Publisher: CRC Press

ISBN: 1439875227

Category: Mathematics

Page: 418

View: 7391

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Multivariate Survival Analysis and Competing Risks introduces univariate survival analysis and extends it to the multivariate case. It covers competing risks and counting processes and provides many real-world examples, exercises, and R code. The text discusses survival data, survival distributions, frailty models, parametric methods, multivariate data and distributions, copulas, continuous failure, parametric likelihood inference, and non- and semi-parametric methods. There are many books covering survival analysis, but very few that cover the multivariate case in any depth. Written for a graduate-level audience in statistics/biostatistics, this book includes practical exercises and R code for the examples. The author is renowned for his clear writing style, and this book continues that trend. It is an excellent reference for graduate students and researchers looking for grounding in this burgeoning field of research.

Survival Analysis

Models and Applications

Author: Xian Liu

Publisher: John Wiley & Sons

ISBN: 1118307674

Category: Mathematics

Page: 427

View: 9910

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Survival analysis concerns sequential occurrences of events governed by probabilistic laws. Recent decades have witnessed many applications of survival analysis in various disciplines. This book introduces both classic survival models and theories along with newly developed techniques. Readers will learn how to perform analysis of survival data by following numerous empirical illustrations in SAS. Survival Analysis: Models and Applications: Presents basic techniques before leading onto some of the most advanced topics in survival analysis. Assumes only a minimal knowledge of SAS whilst enabling more experienced users to learn new techniques of data input and manipulation. Provides numerous examples of SAS code to illustrate each of the methods, along with step-by-step instructions to perform each technique. Highlights the strengths and limitations of each technique covered. Covering a wide scope of survival techniques and methods, from the introductory to the advanced, this book can be used as a useful reference book for planners, researchers, and professors who are working in settings involving various lifetime events. Scientists interested in survival analysis should find it a useful guidebook for the incorporation of survival data and methods into their projects.

Competing Risks and Multistate Models with R

Author: Jan Beyersmann,Arthur Allignol,Martin Schumacher

Publisher: Springer Science & Business Media

ISBN: 1461420350

Category: Mathematics

Page: 245

View: 9988

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This book covers competing risks and multistate models, sometimes summarized as event history analysis. These models generalize the analysis of time to a single event (survival analysis) to analysing the timing of distinct terminal events (competing risks) and possible intermediate events (multistate models). Both R and multistate methods are promoted with a focus on nonparametric methods.

Handbook of Survival Analysis

Author: John P. Klein,Hans C. van Houwelingen,Joseph G. Ibrahim,Thomas H. Scheike

Publisher: CRC Press

ISBN: 146655567X

Category: Mathematics

Page: 656

View: 4825

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Handbook of Survival Analysis presents modern techniques and research problems in lifetime data analysis. This area of statistics deals with time-to-event data that is complicated by censoring and the dynamic nature of events occurring in time. With chapters written by leading researchers in the field, the handbook focuses on advances in survival analysis techniques, covering classical and Bayesian approaches. It gives a complete overview of the current status of survival analysis and should inspire further research in the field. Accessible to a wide range of readers, the book provides: An introduction to various areas in survival analysis for graduate students and novices A reference to modern investigations into survival analysis for more established researchers A text or supplement for a second or advanced course in survival analysis A useful guide to statistical methods for analyzing survival data experiments for practicing statisticians

Introducing Survival and Event History Analysis

Author: Melinda Mills

Publisher: SAGE Publications

ISBN: 1848601026

Category: Social Science

Page: 279

View: 4849

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This book is an accessible, practical and comprehensive guide for researchers from multiple disciplines including biomedical, epidemiology, engineering and the social sciences. Written for accessibility, this book will appeal to students and researchers who want to understand the basics of survival and event history analysis and apply these methods without getting entangled in mathematical and theoretical technicalities. Inside, readers are offered a blueprint for their entire research project from data preparation to model selection and diagnostics. Engaging, easy to read, functional and packed with enlightening examples, ‘hands-on’ exercises, conversations with key scholars and resources for both students and instructors, this text allows researchers to quickly master advanced statistical techniques. It is written from the perspective of the ‘user’, making it suitable as both a self-learning tool and graduate-level textbook. Also included are up-to-date innovations in the field, including advancements in the assessment of model fit, unobserved heterogeneity, recurrent events and multilevel event history models. Practical instructions are also included for using the statistical programs of R, STATA and SPSS, enabling readers to replicate the examples described in the text.

Survival Analysis by Example

Hands on Approach Using R

Author: Faye Anderson

Publisher: Createspace Independent Publishing Platform

ISBN: 9781540314352

Category:

Page: 40

View: 6073

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This is an applied handbook on survival analysis (also known as reliability or duration analysis) with annotated examples using S-Plus or R. This is the first book ever explaining survival analysis by example and is intended for users at all levels. The examples can easily be replicated using other software. Key topics include exploratory analyses, parametric, non-parametric and semi-parametric models, and model selection.

Analysis of Binary Data, Second Edition

Author: D.R. Cox

Publisher: Routledge

ISBN: 1351466720

Category: Mathematics

Page: 240

View: 586

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The first edition of this book (1970) set out a systematic basis for the analysis of binary data and in particular for the study of how the probability of 'success' depends on explanatory variables. The first edition has been widely used and the general level and style have been preserved in the second edition, which contains a substantial amount of new material. This amplifies matters dealt with only cryptically in the first edition and includes many more recent developments. In addition the whole material has been reorganized, in particular to put more emphasis on m.aximum likelihood methods. There are nearly 60 further results and exercises. The main points are illustrated by practical examples, many of them not in the first edition, and some general essential background material is set out in new Appendices.

The Frailty Model

Author: Luc Duchateau,Paul Janssen

Publisher: Springer Science & Business Media

ISBN: 038772835X

Category: Mathematics

Page: 316

View: 1612

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Readers will find in the pages of this book a treatment of the statistical analysis of clustered survival data. Such data are encountered in many scientific disciplines including human and veterinary medicine, biology, epidemiology, public health and demography. A typical example is the time to death in cancer patients, with patients clustered in hospitals. Frailty models provide a powerful tool to analyze clustered survival data. In this book different methods based on the frailty model are described and it is demonstrated how they can be used to analyze clustered survival data. All programs used for these examples are available on the Springer website.

Event History Analysis with R

Author: Göran Broström

Publisher: CRC Press

ISBN: 143983167X

Category: Mathematics

Page: 236

View: 5241

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With an emphasis on social science applications, Event History Analysis with R presents an introduction to survival and event history analysis using real-life examples. Keeping mathematical details to a minimum, the book covers key topics, including both discrete and continuous time data, parametric proportional hazards, and accelerated failure times. Features Introduces parametric proportional hazards models with baseline distributions like the Weibull, Gompertz, Lognormal, and Piecewise constant hazard distributions, in addition to traditional Cox regression Presents mathematical details as well as technical material in an appendix Includes real examples with applications in demography, econometrics, and epidemiology Provides a dedicated R package, eha, containing special treatments, including making cuts in the Lexis diagram, creating communal covariates, and creating period statistics A much-needed primer, Event History Analysis with R is a didactically excellent resource for students and practitioners of applied event history and survival analysis.

Applied Survival Analysis, Textbook and Solutions Manual

Time-to-Event

Author: David W. Hosmer, Jr.,Stanley Lemeshow

Publisher: Wiley-Interscience

ISBN: 9780471437321

Category: Mathematics

Page: 648

View: 6537

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A Practical, Up-To-Date Guide To Modern Methods In The Analysis Of Time To Event Data. The rapid proliferation of powerful and affordable statistical software packages over the past decade has inspired the development of an array of valuable new methods for analyzing survival time data. Yet there continues to be a paucity of statistical modeling guides geared to the concerns of health-related researchers who study time to event data. This book helps bridge this important gap in the literature. Applied Survival Analysis is a comprehensive introduction to regression modeling for time to event data used in epidemiological, biostatistical, and other health-related research. Unlike other texts on the subject, it focuses almost exclusively on practical applications rather than mathematical theory and offers clear, accessible presentations of modern modeling techniques supplemented with real-world examples and case studies. While the authors emphasize the proportional hazards model, descriptive methods and parametric models are also considered in some detail. Key topics covered in depth include: * Variable selection. * Identification of the scale of continuous covariates. * The role of interactions in the model. * Interpretation of a fitted model. * Assessment of fit and model assumptions. * Regression diagnostics. * Recurrent event models, frailty models, and additive models. * Commercially available statistical software and getting the most out of it. Applied Survival Analysis is an ideal introduction for graduate students in biostatistics and epidemiology, as well as researchers in health-related fields.

The R Book

Author: Michael J. Crawley

Publisher: John Wiley & Sons

ISBN: 1118448960

Category: Mathematics

Page: 1080

View: 658

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Hugely successful and popular text presenting an extensive and comprehensive guide for all R users The R language is recognized as one of the most powerful and flexible statistical software packages, enabling users to apply many statistical techniques that would be impossible without such software to help implement such large data sets. R has become an essential tool for understanding and carrying out research. This edition: Features full colour text and extensive graphics throughout. Introduces a clear structure with numbered section headings to help readers locate information more efficiently. Looks at the evolution of R over the past five years. Features a new chapter on Bayesian Analysis and Meta-Analysis. Presents a fully revised and updated bibliography and reference section. Is supported by an accompanying website allowing examples from the text to be run by the user. Praise for the first edition: ‘…if you are an R user or wannabe R user, this text is the one that should be on your shelf. The breadth of topics covered is unsurpassed when it comes to texts on data analysis in R.’ (The American Statistician, August 2008) ‘The High-level software language of R is setting standards in quantitative analysis. And now anybody can get to grips with it thanks to The R Book…’ (Professional Pensions, July 2007)

Modeling Survival Data: Extending the Cox Model

Author: Terry M. Therneau,Patricia M. Grambsch

Publisher: Springer Science & Business Media

ISBN: 1475732945

Category: Mathematics

Page: 350

View: 7123

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This book is for statistical practitioners, particularly those who design and analyze studies for survival and event history data. Building on recent developments motivated by counting process and martingale theory, it shows the reader how to extend the Cox model to analyze multiple/correlated event data using marginal and random effects. The focus is on actual data examples, the analysis and interpretation of results, and computation. The book shows how these new methods can be implemented in SAS and S-Plus, including computer code, worked examples, and data sets.

Survival Analysis Using S

Analysis of Time-to-Event Data

Author: Mara Tableman,Jong Sung Kim

Publisher: CRC Press

ISBN: 9780203501412

Category: Mathematics

Page: 280

View: 8064

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Survival Analysis Using S: Analysis of Time-to-Event Data is designed as a text for a one-semester or one-quarter course in survival analysis for upper-level or graduate students in statistics, biostatistics, and epidemiology. Prerequisites are a standard pre-calculus first course in probability and statistics, and a course in applied linear regression models. No prior knowledge of S or R is assumed. A wide choice of exercises is included, some intended for more advanced students with a first course in mathematical statistics. The authors emphasize parametric log-linear models, while also detailing nonparametric procedures along with model building and data diagnostics. Medical and public health researchers will find the discussion of cut point analysis with bootstrap validation, competing risks and the cumulative incidence estimator, and the analysis of left-truncated and right-censored data invaluable. The bootstrap procedure checks robustness of cut point analysis and determines cut point(s). In a chapter written by Stephen Portnoy, censored regression quantiles - a new nonparametric regression methodology (2003) - is developed to identify important forms of population heterogeneity and to detect departures from traditional Cox models. By generalizing the Kaplan-Meier estimator to regression models for conditional quantiles, this methods provides a valuable complement to traditional Cox proportional hazards approaches.

Survival Analysis

A Practical Approach

Author: David Machin,Yin Bun Cheung,Mahesh Parmar

Publisher: John Wiley & Sons

ISBN: 0470870419

Category: Medical

Page: 278

View: 1055

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Well received in its first edition, Survival Analysis: A Practical Approach is completely revised to provide an accessible and practical guide to survival analysis techniques in diverse environments. Illustrated with many authentic examples, the book introduces basic statistical concepts and methods to construct survival curves, later developing them to encompass more specialised and complex models. During the years since the first edition there have been several new topics that have come to the fore and many new applications. Parallel developments in computer software programmes, used to implement these methodologies, are relied upon throughout the text to bring it up to date.